AGenDA: gene prediction by cross-species sequence comparison
Taher, L ; Rinner, O ; Garg, S ; Sczyrba, Alexander ; Morgenstern, BIn: Nucleic Acids Research, Jg. 32 H. Web Server, S. W305-W308AKE - The Accelerated k-mer Exploration Web-Tool for Rapid Taxonomic Classification and Visualization
Langenkämper, Daniel ; Goesmann, Alexander ; Nattkemper, Tim WilhelmIn: BMC Bioinformatics, Jg. 15 H. 1An Expressed Sequence Tag Analysis of the Intertidal Brown Seaweeds Fucus serratus (L.) and F. vesiculosus (L.) (Heterokontophyta, Phaeophyceae) in Response [...]
Pearson, Gareth A. ; Hoarau, Galice ; Lago-Leston, Asuncion ; Coyer, James A. ; Kube, Michael ; Reinhardt, Richard ; Henckel, Kolja ; Serrao, Ester T. A. ; Corre, Erwan ; Olson, Jeanine L.In: Marine Biotechnology, Jg. 12 H. 2, S. 195-213Approximating the DCJ distance of balanced genomes in linear time
Rubert, Diego ; Feijão, Pedro ; Dias Vieira Braga, Marília ; Stoye, Jens ; Martinez, Fábio Henrique ViduaniIn: Algorithms for Molecular Biology, Jg. 12 H. 1Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage
Holley, Guillaume ; Wittler, Roland ; Stoye, JensIn: Algorithms for Molecular Biology, Jg. 11 H. 1Chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene set
Pucker, Boas ; Holtgräwe, Daniela ; Stadermann, Kai Bernd ; Frey, Katharina ; Huettel, Bruno ; Reinhardt, Richard ; Weisshaar, BerndIn: PLoS One, Jg. 14 H. 5Comparison of Read Mapping and Variant Calling Tools for the Analysis of Plant NGS Data
Schilbert, Hanna ; Rempel, Andreas ; Pucker, BoasIn: Plants, Jg. 9 H. 4The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110
Schwientek, Patrick ; Szczepanowski, Rafael ; Rückert, Christian ; Kalinowski, Jörn ; Klein, Andreas ; Selber, Klaus ; Wehmeier, Udo F. ; Stoye, Jens ; Pühler, AlfredIn: BMC Genomics, Jg. 13 H. 1Genetic Potential of the Biocontrol Agent Pseudomonas brassicacearum (Formerly P. trivialis) 3Re2-7 Unraveled by Genome Sequencing and Mining, Comparative [...]
Nelkner, Johanna ; Tejerizo, Gonzalo Torres ; Hassa, Julia ; Lin, Timo Wentong ; Witte, Julian ; Verwaaijen, Bart ; Winkler, Anika ; Bunk, Boyke ; Spröer, Cathrin ; Overmann, Jörg ; Grosch, Rita ; Pühler, Alfred ; Schlüter, AndreasIn: Genes, Jg. 10 H. 8Genomics and Transcriptomics Advance in Plant Sciences
Pucker, Boas ; Schilbert, Hanna ; Singh, Sudhir P. (Hrsg.) ; Upadhyay, Santosh Kumar (Hrsg.) ; Pandey, Ashutosh (Hrsg.) ; Kumar, Sunil (Hrsg.)Multiple Occurrences of a 168-Nucleotide Deletion in SARS-CoV-2 ORF8, Unnoticed by Standard Amplicon Sequencing and Variant Calling Pipelines
Brandt, David ; Simunovic, Marina ; Busche, Tobias ; Haak, Markus ; Belmann, Peter ; Jünemann, Sebastian ; Schulz, Tizian ; Klages, Levin Joe ; Vinke, Svenja ; Beckstette, Michael ; Pohl, Ehmke ; Scherer, Christiane ; Sczyrba, Alexander ; Kalinowski, JörnIn: Viruses, Jg. 13 H. 9Natural family-free genomic distance.
Rubert, Diego P ; Martinez, Fabio V ; Dias Vieira Braga, MaríliaIn: Algorithms for molecular biology : AMB, Jg. 16 H. 1On the Similarity of Sets of Permutations and its Applications to Genome Comparison
Bergeron, Anne ; Stoye, JensRAD Sequencing and a Hybrid Antarctic Fur Seal Genome Assembly Reveal Rapidly Decaying Linkage Disequilibrium, Global Population Structure and Evidence [...]
Humble, Emily ; Dasmahapatra, Kanchon K. ; Martinez-Barrio, Alvaro ; Gregório, Inês ; Forcada, Jaume ; Polikeit, Ann-Christin ; Goldsworthy, Simon D. ; Goebel, Michael E. ; Kalinowski, Jörn ; Wolf, Jochen B. W. ; Hoffman, JosephIn: G3: Genes|Genomes|Genetics, Jg. 8 H. 8, S. 2709-2722Reference-based QUantification Of gene Dispensability (QUOD)
Sielemann, Katharina ; Weisshaar, Bernd ; Pucker, BoasIn: Plant Methods, Jg. 17 H. 1